Create configuration and app.R files — create_config

This function runs an interactive wizard that guides the user through the creation of a basic configuration file. The wizard will work with the simple case of expression data where one sample matches exactly to one subject.

Usage

create_config_wizard(target_dir)

Arguments

target_dir: location where the configuration will be saved

Value

Creates configuration file in target_dir

Details

Before you run the wizard, you should ensure that the target folder contains at least the expression matrix and measures data files. The expression matrix should follow the format of sample IDs in columns and genes in rows, with gene names in the first column of the table. The measures file should follow the format of subjects in rows and measures in columns, and you should ensure that all subjects have one sample and vice-versa.

Examples

if (interactive()) {
    dir.create("newapp")
    create_config_wizard("newapp")
}